Author: Denis Avetisyan
A comprehensive analysis reveals how targeted interventions can control the behavior of large language models and significantly improve their safety.

This paper presents a multi-level causality analysis framework demonstrating effective vulnerability mitigation through interventions at the token, neuron, layer, and representation levels.
Despite the remarkable capabilities of large language models (LLMs), vulnerabilities to adversarial attacks and unintended behaviors remain a critical concern. To address this, we present ‘SoK: a Comprehensive Causality Analysis Framework for Large Language Model Security’, a unified framework for systematically investigating causal factors influencing LLM safety across token, neuron, layer, and representation levels. Our analysis demonstrates that targeted interventions on causally critical components can reliably modify safety behaviors, with impactful mechanisms often localized within a small subset of model parameters. This work establishes a reproducible foundation for causality-driven research, but how can we best leverage these insights to build truly robust and aligned LLMs?
The Looming Threat of LLM Manipulation
Despite their remarkable capabilities, large language models (LLMs) such as LLaMA2-7B, Qwen2.5-7B, and LLaMA3.1-8B are susceptible to “jailbreaking” – a class of attacks designed to circumvent the safety protocols embedded within these systems. These attacks don’t exploit technical flaws in the model’s code, but rather leverage carefully crafted prompts – often subtle manipulations of language – to trick the LLM into generating harmful, biased, or otherwise prohibited content. The vulnerability stems from the LLM’s core function: predicting the most likely continuation of a given text. Attackers exploit this by phrasing requests in a way that, while technically adhering to the prompt’s structure, encourages the model to bypass its internal safeguards and produce outputs it was intended to avoid. This poses a significant challenge for responsible deployment, as even seemingly robust models can be induced to generate undesirable content with relatively simple adversarial prompts.
Current vulnerabilities in Large Language Models (LLMs) are being actively probed by increasingly sophisticated attack methods like AutoDAN and GCG. These techniques don’t simply ask for prohibited content; instead, they cleverly manipulate the LLM’s internal processing, bypassing established safety protocols to generate harmful or biased outputs. AutoDAN, for example, automates the discovery of adversarial prompts, while GCG employs a gradient-based approach to craft inputs that reliably elicit undesirable responses. This ongoing exploitation raises significant concerns about the responsible deployment of LLMs in sensitive applications, emphasizing the need for proactive defense mechanisms and rigorous testing before widespread integration into critical systems. The potential for malicious actors to consistently circumvent safety features underscores the urgency of addressing these vulnerabilities to ensure the safe and ethical application of this powerful technology.
Rigorous evaluation of Large Language Models using benchmarks such as AdvBench consistently reveals a significant vulnerability to jailbreaking attacks, underscoring the urgent need for more resilient defenses. These tests demonstrate that even relatively simple prompts can bypass safety protocols, potentially enabling the generation of harmful or inappropriate content. However, recent advancements in causality analysis offer a promising solution; a multi-level approach to identifying the root causes of these attacks has achieved a 100% detection success rate in controlled experiments. This suggests that by understanding how these jailbreaks work – tracing the causal links within the model – it is possible to proactively identify and neutralize malicious prompts before they can trigger undesirable outputs, paving the way for safer and more reliable LLM deployments.
Unraveling the Mechanisms of LLM Vulnerability
The Causality Analysis framework is a systematic approach designed to deconstruct the internal operational logic of Large Language Models (LLMs) with the specific goal of identifying the originating causes of jailbreak exploits. This framework moves beyond simply observing undesirable outputs; it focuses on tracing the flow of information through the model’s layers and components to pinpoint the precise mechanisms that lead to harmful or unintended responses. The methodology involves controlled interventions and analysis of internal representations to establish causal links between specific inputs, internal states, and ultimately, the generated output. This allows researchers to move beyond correlational understandings of LLM failures and towards a mechanistic understanding of their vulnerabilities.
Traditional vulnerability assessments of Large Language Models (LLMs) often rely on observing outputs to identify problematic behaviors; however, this approach fails to establish why those outputs occur. Our methodology moves beyond this superficial observation by focusing on internal model states and activations. Specifically, we analyze the flow of information through the network during inference to pinpoint the specific neurons and representational layers that contribute to harmful outputs. This involves tracing the activation patterns associated with adversarial prompts and identifying the components responsible for generating undesirable responses. By isolating these internal mechanisms, we can determine the precise points of failure and understand the causal relationships between input, internal states, and output, enabling more effective mitigation strategies than those based solely on output analysis.
Identifying causal pathways within Large Language Models (LLMs) enables the development of targeted interventions to address vulnerabilities while preserving model performance. This approach differs from broad mitigation strategies by focusing on specific components and interactions responsible for generating harmful outputs. Analysis of neuron and representation-level inference indicates a processing time of approximately 0.07 to 0.14 seconds per input, suggesting that detailed causal analysis is computationally feasible and does not introduce significant latency. Interventions informed by this analysis can refine model behavior at the source of the vulnerability, minimizing unintended consequences and maintaining overall model utility.

Dissecting LLM Behavior: A Multi-Level Investigation
Neuron-Level Analysis utilizes logistic regression to pinpoint sparsely activated neurons within the language model that demonstrate a significant correlation with the generation of harmful outputs. This technique identifies a small subset of neurons whose activation states are predictive of “jailbreak” attempts – prompts designed to circumvent safety protocols. The analysis achieved an F1-score of 0.977 in detecting these jailbreak attempts, indicating a high degree of accuracy in associating specific neuronal activations with unsafe behavior. This suggests that safety mechanisms are not diffusely represented across the network, but rather localized to a relatively small number of critical neurons.
Layer-Level Analysis investigates the propagation of causal influence within the transformer architecture by tracing activation patterns across successive layers. This analysis demonstrates that seemingly innocuous input prompts can, through a series of transformations, activate pathways leading to the generation of harmful outputs. Specifically, the methodology identifies how initial input tokens are processed and modified as they traverse each layer, ultimately revealing which layers are most responsible for shifting the model’s behavior towards unsafe responses. By quantifying the influence of each layer, researchers can pinpoint the stages where intervention might be most effective in preventing the generation of harmful content and improving model safety.
Representation-Level Analysis investigates the safety characteristics encoded within the embedding spaces of Large Language Models. This is achieved through Principal Component Analysis (PCA) to reduce dimensionality and visualize embedding geometry, alongside Layer Consistency measurements which quantify the degree to which representations remain stable across transformer layers. Analysis reveals that safe inputs cluster distinctly from harmful ones within this embedding space, establishing discernible safety boundaries. Adversarial attacks, conversely, demonstrably perturb these established structures, shifting input embeddings closer to regions associated with harmful outputs and thereby triggering undesirable model behavior. This approach allows for the identification of vulnerable regions within the embedding space and provides insight into the mechanisms by which attacks bypass safety mechanisms.
Token-level analysis investigates the causal impact of individual input tokens on model outputs, providing detailed understanding of how attacks function. This granular approach combines multiple causal signals derived from token analysis to achieve high accuracy in detecting problematic model behaviors; specifically, hallucination detection yields F1-scores between 0.956 and 0.987, while fairness detection consistently achieves F1-scores ranging from 0.990 to 1.000. The methodology allows for identification of specific tokens that disproportionately influence harmful or biased outputs, enabling targeted mitigation strategies.

Toward Robust and Reliable LLMs: A Paradigm Shift
Current defenses against adversarial attacks, often termed “jailbreaks,” on large language models (LLMs) frequently treat symptoms rather than root causes. This work delves into the internal mechanisms that allow malicious prompts to bypass safety protocols, revealing a multi-level causal chain from initial prompt construction to undesirable model outputs. By systematically identifying these causal links – encompassing prompt ambiguity, semantic manipulation, and model biases – a pathway emerges for building genuinely robust LLMs. Instead of simply patching vulnerabilities as they appear, developers can proactively address the underlying weaknesses, designing systems resistant to a wider range of attacks. This approach moves beyond reactive defenses, fostering a future where LLMs are not merely superficially secure, but fundamentally reliable and trustworthy in diverse applications.
A novel framework now offers developers a structured methodology for identifying weaknesses and strengthening defenses in large language models. This systematic approach moves beyond reactive patching, enabling proactive vulnerability assessment throughout the development lifecycle. By dissecting potential attack vectors and understanding how they exploit model internals, developers can anticipate and mitigate safety concerns before deployment. The framework doesn’t simply flag problematic outputs; it traces the causal pathways that lead to them, allowing for targeted interventions at the source. This shifts the focus from symptom management to preventative design, ultimately fostering more reliable and trustworthy AI systems capable of consistently aligning with intended behavior.
Current approaches to large language model (LLM) safety often focus on surface-level defenses – filtering prompts or patching obvious vulnerabilities – but research indicates these are frequently circumvented by cleverly disguised jailbreak attacks. A deeper understanding of how these models arrive at problematic outputs is crucial for building truly robust systems. This work emphasizes that effective mitigation requires probing the internal mechanisms of LLMs – the interplay of weights, activations, and attention patterns – rather than simply treating symptoms. By identifying the causal pathways that lead to undesirable responses, developers can design interventions that address the root causes of vulnerability, creating defenses less susceptible to adversarial manipulation and fostering more trustworthy AI.
A nuanced understanding of the causal pathways behind LLM vulnerabilities is poised to reshape the development of future AI systems. Recent research demonstrates that a multi-level causality analysis can achieve a 100% success rate in detecting jailbreak attacks, revealing that superficial defenses are insufficient. This capability extends beyond mere detection; it provides actionable insights for designing LLM architectures and refining training strategies to preemptively address safety concerns. By focusing on the internal mechanisms that enable these exploits, developers can move beyond reactive patching and toward proactively building models inherently resistant to manipulation, fostering greater trust and reliability in increasingly powerful AI technologies.
The pursuit of robust large language models often descends into a labyrinth of intricate defenses. This work, however, advocates for a more discerning approach – a systematic dismantling of vulnerabilities through targeted causal intervention. It recalls Ada Lovelace’s observation that “The Analytical Engine has no pretensions whatever to originate anything. It can do whatever we know how to order it to perform.” The authors demonstrate precisely this – that understanding the causal pathways within these models allows for precise ‘ordering’ of behavior, moving beyond reactive patching to proactive control. The multi-level framework, probing token, neuron, layer, and representation levels, isn’t merely complexity for its own sake; it’s a necessary decomposition to reveal the underlying mechanisms, echoing a preference for clarity over obfuscation.
Where Do We Go From Here?
The presented framework, while offering a granular lens through which to examine large language model vulnerabilities, does not, and cannot, offer a final resolution. The pursuit of ‘safety alignment’ often feels akin to rearranging deck chairs on a ship built of probabilities. The efficacy of interventions, meticulously demonstrated at various levels, remains tethered to the specific attacks considered. A truly robust defense demands anticipation of unforeseen exploits-a task perpetually beyond reach.
Future work must address the limitations inherent in focusing solely on observable behavior. Causality is not simply a matter of input and output; the internal ‘representations’ themselves require deeper, more fundamental scrutiny. The current approach treats these representations as black boxes amenable to manipulation. A more fruitful path may lie in understanding the origins of these representations-the inherent biases and assumptions baked into the training data and model architecture.
Ultimately, the field confronts a paradox. The more complex these models become, the more alluring – and dangerous – their vulnerabilities. The goal, then, is not simply to patch the symptoms, but to cultivate a more austere design philosophy. Perhaps the most effective defense will not be found in adding layers of complexity, but in achieving a radical simplicity – a clarity of purpose that minimizes the surface area for attack.
Original article: https://arxiv.org/pdf/2512.04841.pdf
Contact the author: https://www.linkedin.com/in/avetisyan/
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2025-12-06 14:53